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July 9, 2014: This update has a few minor corrections to the source code. The first change corrects the non-overlapping template test to make it correctly skip bits when a sequence matches. The second change is to correct the π values in the overlapping template test.
Note: When using the samples from the data/ directory to derive the values from Appendix B the suite should be invoked with a stream length of 1,000,000 bits and there is one stream per file. For the tests that have parameters the default values should be used. Additionally, the results from the tables in Appendix B are not found in the finalAnalysisReport.txt file. They are in the results.txt files in the individual test directories (when running the sample data files these test directories are in the directory experiments/AlgorithmTesting/